# ===========================================================================
#
#                            PUBLIC DOMAIN NOTICE
#               National Center for Biotechnology Information
#
#  This software/database is a "United States Government Work" under the
#  terms of the United States Copyright Act.  It was written as part of
#  the author's official duties as a United States Government employee and
#  thus cannot be copyrighted.  This software/database is freely available
#  to the public for use. The National Library of Medicine and the U.S.
#  Government have not placed any restriction on its use or reproduction.
#
#  Although all reasonable efforts have been taken to ensure the accuracy
#  and reliability of the software and data, the NLM and the U.S.
#  Government do not and cannot warrant the performance or results that
#  may be obtained by using this software or data. The NLM and the U.S.
#  Government disclaim all warranties, express or implied, including
#  warranties of performance, merchantability or fitness for any particular
#  purpose.
#
#  Please cite the author in any work or product based on this material.
#
# ===========================================================================

#add_compile_definitions( _ARCH_BITS=${BITS} )

set( SRC
	jni_ReadCollectionItf
	jni_ReferenceIteratorItf
	jni_ReferenceItf
	jni_ReferenceSequenceItf
	jni_PileupIteratorItf
	jni_PileupItf
	jni_PileupEventIteratorItf
	jni_PileupEventItf
	jni_AlignmentIteratorItf
	jni_AlignmentItf
	jni_ReadGroupIteratorItf
	jni_ReadGroupItf
	jni_ReadIteratorItf
	jni_ReadItf
	jni_FragmentItf
	jni_StatisticsItf
	jni_Package
	jni_String
	jni_Refcount
	jni_ErrorMsg
)

include_directories( ${CMAKE_SOURCE_DIR}/ngs/ncbi/ngs-jni )

GenerateStaticLibs( ngs-bind-java "${SRC}" )
